19	experiments
2,961,756	PSMs
150,781	distinct peptides
6,015	canonical proteins

About

The Rohu PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Labeo rohita datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Publication

Nissa, M.U., Reddy, P.J., Pinto, N., Sun, Z., Ghosh, B., Moritz, R.L., Goswami, M. and Srivastava, S., 2022. The PeptideAtlas of a widely cultivated fish Labeo rohita: A resource for the Aquaculture Community. Scientific data, 9(1), pp.1-13. DOI: 10.1038/s41597-022-01259-9

Download

Below are individual Rohu PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Rohu 2020-07 PSM FDR = 0.0008Latest Build

Biosequence Set in FASTA format [59MB]
Peptide CDS and chromosomal coordinates [36MB]
Peptide CDS coordinates [24MB]
Peptide sequences in FASTA format [4MB]

Help

Complete description of each of the available download formats

Other Resources

www.fishprot.org: The Fish Proteome Map (FPM) at IIT Bombay, India.

Acknowledgements

This work was supported by Govt. of India. Department of Biotechnology, the Director General, Indian Council of Agricultural Research; Director, ICAR-Central Institute of Fisheries Education, Mumbai, the MASS-FIITB at IIT Bombay, and by the University Grants Commission. We acknowledge the US National Institutes for Health and the National Science Foundation for awards supporting this work. .