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RAW DATA AVAILABLE FOR DOWNLOAD

It is our policy to make publicly available for download as much of the raw data we use to build the PeptideAtlas as possible. This includes datasets that have been previously published or otherwise released by the data producers. If you download and use these data in a published work, please cite the associated article (or data contributors if unpublished); an acknowledgement of the PeptideAtlas repository would also be appreciated. There are also many unpublished raw datasets used to build the PeptideAtlas, and these are not made available for download until publication or release by the producers.

FILTERING THE TABLE

You can use the row above the orange row to filter and limit the data displayed within the table. Just type or select the search terms in the box above each column, and hit enter, the table will be filtered according to all filter terms you entered. Click "reset" on the up right corner of the table to clear all the texts in the first row.

There are 91 experimental datasets available for download (Wed Apr 13 10:03:47 PDT 2011 )

Sample Accession	Name	Organism	Resources	Description	Data Contributors	Related Publications
PAe000331	15_clinprot_c3	Human	mzXML_format(454.112 MB) RAW_format(452.659 MB) Search_Results(117.181 MB) ProteinProphet_file(732.145 KB) README	15_clinprot_c3	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000338	16_clinprot_c8	Human	mzXML_format(558.464 MB) RAW_format(515.598 MB) Search_Results(117.781 MB) ProteinProphet_file(682.391 KB) README	16_clinprot_c8	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000332	17_wcx	Human	mzXML_format(778.227 MB) RAW_format(724.203 MB) Search_Results(143.451 MB) ProteinProphet_file(824.915 KB) README	17_wcx	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000335	18_size	Human	mzXML_format(660.408 MB) RAW_format(545.000 MB) Search_Results(138.946 MB) ProteinProphet_file(485.835 KB) README	18_size	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000333	19_proteinag	Human	mzXML_format(544.678 MB) RAW_format(503.578 MB) Search_Results(124.483 MB) ProteinProphet_file(401.187 KB) README	19_proteinag	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000334	20_cys	Human	mzXML_format(775.742 MB) RAW_format(716.013 MB) Search_Results(119.577 MB) ProteinProphet_file(430.907 KB) README	20_cys	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000347	2007-08-08_SEC_IEF_LTQFT	Human	mzXML_format(2.086 GB) RAW_format(27.224 GB) Search_Results(783.205 MB) sequest_params0 ProteinProphet_file(741.084 KB) README	2007-08-08_SEC_IEF_LTQFT	Johan Malmstroem
PAe000345	2007-08-24_IEF_GeH_LTQ	Human	mzXML_format(6.089 GB) RAW_format(5.593 GB) Search_Results(718.556 MB) sequest_params0 ProteinProphet_file(267.473 KB) README	2007-08-24_IEF_GeH_LTQ	Johan Malmstroem
PAe000344	2007-08-24_SEC_OGE_2-Agilent	Human	mzXML_format(4.796 GB) RAW_format(9.527 GB) Search_Results(257.964 MB) sequest_params0 ProteinProphet_file(107.235 KB) README	2007-08-24_SEC_OGE_2-Agilent	Johan Malmstroem
PAe000348	2007-08-24_SEC_OGE_2-LTQ	Human	mzXML_format(4.796 GB) RAW_format(9.527 GB) Search_Results(498.327 MB) sequest_params0 ProteinProphet_file(233.164 KB) README	2007-08-24_SEC_OGE_2-LTQ	Johan Malmstroem
PAe000341	2007-08-24_SEC_OGE_2-LTQFT	Human	mzXML_format(4.796 GB) RAW_format(9.527 GB) Search_Results(98.096 MB) sequest_params0 ProteinProphet_file(139.915 KB) README	2007-08-24_SEC_OGE_2-LTQFT	Johan Malmstroem
PAe000337	21_unfract	Human	mzXML_format(442.372 MB) RAW_format(413.615 MB) Search_Results(73.709 MB) ProteinProphet_file(476.964 KB) README	21_unfract	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000336	22_mars	Human	mzXML_format(656.933 MB) RAW_format(609.736 MB) Search_Results(196.441 MB) ProteinProphet_file(895.899 KB) README	22_mars	Amanda Paulovich	Paulavich et al. (2007) J Proteome Res. 2007 Feb;6(2):828-36
PAe000029	breakfast_qtof08	Human	mzXML_format(4.942 MB) Search_Results(7.841 MB) ProteinProphet_file(80.561 KB) README	Human blood	Hui Zhang
PAe000030	caex_qtof08	Human	mzXML_format(33.246 MB) Search_Results(40.549 MB) ProteinProphet_file(236.996 KB) README	Human blood	Hui Zhang
PAe000031	cat_ex_qtof	Human	mzXML_format(59.909 MB) Search_Results(36.419 MB) ProteinProphet_file(671.347 KB) README	Human blood	Hui Zhang
PAe000053	cation_ex_lcq	Human	mzXML_format(1.203 GB) Search_Results(305.218 MB) ProteinProphet_file(587.871 KB) README	Human blood	Hui Zhang
PAe000950	HsGlycoPlasma35indiv	Human	mzXML_format(8.486 GB) RAW_format(5.524 GB) Search_Results(827.637 MB) ProteinProphet_file(203.651 KB) README	HsGlycoPlasma35indiv	Julian Watts
PAe000274	Human serum experiment from P Wilmarth	Human	mzXML_format(188.363 MB) RAW_format(169.157 MB) Search_Results(39.186 MB) ProteinProphet_file(564.714 KB) README	Human serum experiment from P Wilmarth	Phillip Wilmarth
PAe000859	HUPO PPP-I Lab 1 b1-cit	Human	mzXML_format(196.348 MB) RAW_format(78.935 MB) Search_Results(39.351 MB) ProteinProphet_file(285.242 KB) README	hupo1_b1-cit_cam	HUPO Lab 1
PAe000817	HUPO PPP-I Lab 1 b1-edta	Human	mzXML_format(201.461 MB) RAW_format(76.427 MB) Search_Results(40.587 MB) ProteinProphet_file(254.783 KB) README	hupo1_b1-edta_cam	HUPO Lab 1
PAe000862	HUPO PPP-I Lab 1 b1-hep	Human	mzXML_format(173.012 MB) RAW_format(61.751 MB) Search_Results(36.029 MB) ProteinProphet_file(260.877 KB) README	hupo1_b1-hep_cam	HUPO Lab 1
PAe000810	HUPO PPP-I Lab 1 b1-serum	Human	mzXML_format(154.475 MB) RAW_format(43.090 MB) Search_Results(29.500 MB) ProteinProphet_file(134.566 KB) README	hupo1_b1-serum_cam	HUPO Lab 1
PAe000825	HUPO PPP-I Lab 1 b2-cit	Human	mzXML_format(191.076 MB) RAW_format(89.540 MB) Search_Results(44.704 MB) ProteinProphet_file(362.402 KB) README	hupo1_b2-cit_cam	HUPO Lab 1
PAe000806	HUPO PPP-I Lab 1 b2-edta	Human	mzXML_format(194.296 MB) RAW_format(62.268 MB) Search_Results(37.501 MB) ProteinProphet_file(263.190 KB) README	hupo1_b2-edta_cam	HUPO Lab 1
PAe000815	HUPO PPP-I Lab 1 b2-hep	Human	mzXML_format(240.062 MB) RAW_format(106.518 MB) Search_Results(45.361 MB) ProteinProphet_file(314.429 KB) README	hupo1_b2-hep_cam	HUPO Lab 1
PAe000857	HUPO PPP-I Lab 1 b2-serum	Human	mzXML_format(183.495 MB) RAW_format(75.304 MB) Search_Results(37.769 MB) ProteinProphet_file(282.945 KB) README	hupo1_b2-serum_cam	HUPO Lab 1
PAe000797	HUPO PPP-I Lab 1 b3-serum	Human	mzXML_format(155.048 MB) RAW_format(51.681 MB) Search_Results(29.458 MB) ProteinProphet_file(142.322 KB) README	hupo1_b3-serum_cam	HUPO Lab 1
PAe000097	HUPO PPP-I Lab 12 b1 run31	Human	mzXML_format(31.025 MB) dtapack_format(30.379 MB) Search_Results(27.367 MB) ProteinProphet_file(145.507 KB) README	HUPO plasma sample	HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000098	HUPO PPP-I Lab 12 b1 run32	Human	mzXML_format(34.667 MB) dtapack_format(34.822 MB) Search_Results(30.126 MB) ProteinProphet_file(145.383 KB) README	HUPO plasma sample	HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000099	HUPO PPP-I Lab 12 b1 run33	Human	mzXML_format(43.817 MB) dtapack_format(48.141 MB) Search_Results(26.350 MB) ProteinProphet_file(222.778 KB) README	HUPO plasma sample	HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000100	HUPO PPP-I Lab 12 b1 run34	Human	mzXML_format(22.363 MB) dtapack_format(19.623 MB) Search_Results(21.426 MB) ProteinProphet_file(130.509 KB) README	HUPO plasma sample	HUPO Lab 12 is Hefta, Bristol-Myers Squibb, Pennigton, NJ, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000854	HUPO PPP-I Lab 17 b1-serum	Human	mzXML_format(165.141 MB) RAW_format(147.991 MB) Search_Results(62.845 MB) ProteinProphet_file(322.531 KB) README	hupo17_b1-serum_cam	HUPO Lab 17
PAe000071	HUPO PPP-I Lab 2 b1-cit glyco lcq	Human	mzXML_format(1.156 GB) Search_Results(315.681 MB) ProteinProphet_file(242.440 KB) README	HUPO sample b1-CIT glycopeptide	HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA	Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000072	HUPO PPP-I Lab 2 b1-cit glyco qstar	Human	mzXML_format(11.236 MB) Search_Results(19.590 MB) ProteinProphet_file(131.636 KB) README	HUPO sample b1-CIT glycopeptide	HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA	Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000073	HUPO PPP-I Lab 2 nibsc glyco lcq	Human	mzXML_format(1.283 GB) Search_Results(348.893 MB) ProteinProphet_file(464.634 KB) README	HUPO sample NIBSC glycopeptide	HUPO Lab 2 is Aebersold Lab, Institute for Systems Biology, Seattle, WA	Omenn 2004, Proteomics, V4, I5, 1235-1240
PAe000277	HUPO PPP-I Lab 2 nibsc glyco qstar	Human	mzXML_format(2.814 MB) Search_Results(7.367 MB) ProteinProphet_file(96.705 KB) README	HUPO sample NIBSC glycopeptide on ABI QStar	Reto Ossola
PAe000096	HUPO PPP-I Lab 22 b1-serum	Human	mzXML_format(2.384 GB) RAW_format(2.139 GB) Search_Results(287.868 MB) ProteinProphet_file(1.059 MB) README	HUPO plasma sample	HUPO Lab 22 is Paik, Yonsei Proteome Research Center, Seoul, Korea	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000058	HUPO PPP-I Lab 28 b1-cit	Human	mzXML_format(8.126 MB) RAW_format(7.296 MB) Search_Results(4.015 MB) ProteinProphet_file(106.856 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000059	HUPO PPP-I Lab 28 b1-serum	Human	mzXML_format(8.245 MB) RAW_format(7.402 MB) Search_Results(4.252 MB) ProteinProphet_file(117.602 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000060	HUPO PPP-I Lab 28 b2-cit	Human	mzXML_format(40.941 MB) RAW_format(36.676 MB) Search_Results(13.537 MB) ProteinProphet_file(178.286 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000061	HUPO PPP-I Lab 28 b2-serum	Human	mzXML_format(41.445 MB) RAW_format(37.137 MB) Search_Results(13.396 MB) ProteinProphet_file(178.599 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000062	HUPO PPP-I Lab 28 b3-cit	Human	mzXML_format(8.303 MB) RAW_format(7.453 MB) Search_Results(4.112 MB) ProteinProphet_file(118.499 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000063	HUPO PPP-I Lab 28 b3-serum	Human	mzXML_format(8.095 MB) RAW_format(7.267 MB) Search_Results(4.160 MB) ProteinProphet_file(123.853 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000064	HUPO PPP-I Lab 28 ref-cit	Human	mzXML_format(8.023 MB) RAW_format(7.206 MB) Search_Results(4.100 MB) ProteinProphet_file(100.139 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000065	HUPO PPP-I Lab 28 ref-serum	Human	mzXML_format(7.751 MB) RAW_format(6.963 MB) Search_Results(3.883 MB) ProteinProphet_file(97.586 KB) README	HUPO plasma sample	HUPO Lab 28 is Pounds/Adkins/Rodland/Anderson, Pacific Northwest Natl Lab, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000066	HUPO PPP-I Lab 29 b1-cit	Human	mzXML_format(278.690 MB) RAW_format(340.296 MB) Search_Results(101.474 MB) ProteinProphet_file(524.686 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000067	HUPO PPP-I Lab 29 b1-cit win1	Human	mzXML_format(164.164 MB) RAW_format(148.471 MB) Search_Results(89.821 MB) ProteinProphet_file(548.546 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000068	HUPO PPP-I Lab 29 b1-cit win2	Human	mzXML_format(133.025 MB) RAW_format(121.476 MB) Search_Results(80.931 MB) ProteinProphet_file(363.814 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000130	HUPO PPP-I Lab 29 b1-edta	Human	mzXML_format(365.826 MB) RAW_format(330.980 MB) Search_Results(99.202 MB) ProteinProphet_file(379.241 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000131	HUPO PPP-I Lab 29 b1-edta win1	Human	mzXML_format(196.343 MB) RAW_format(177.427 MB) Search_Results(92.010 MB) ProteinProphet_file(551.892 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000132	HUPO PPP-I Lab 29 b1-edta win2	Human	mzXML_format(142.211 MB) RAW_format(139.679 MB) Search_Results(73.009 MB) ProteinProphet_file(394.933 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000133	HUPO PPP-I Lab 29 b1-hep	Human	mzXML_format(313.319 MB) RAW_format(283.029 MB) Search_Results(85.186 MB) ProteinProphet_file(363.977 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000134	HUPO PPP-I Lab 29 b1-serum	Human	mzXML_format(352.195 MB) RAW_format(318.284 MB) Search_Results(98.979 MB) ProteinProphet_file(463.618 KB) README	HUPO plasma sample	HUPO Lab 29 is Qian/He, Beijing Institute of Radiation Medicine, Beijing, China	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000819	HUPO PPP-I Lab 33 nibsc	Human	mzXML_format(871.758 MB) RAW_format(1.139 GB) Search_Results(70.694 MB) ProteinProphet_file(226.474 KB) README	HUPOPPP33_Deca	HUPO Lab 33
PAe000069	HUPO PPP-I Lab 34 b1-hep	Human	mzXML_format(1.270 GB) RAW_format(1.142 GB) Search_Results(222.195 MB) ProteinProphet_file(1.088 MB) README	HUPO plasma sample	HUPO Lab 34 is Speicher, Wistar Institute, Philadelphia, PA, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000135	HUPO PPP-I Lab 34 b1-serum	Human	mzXML_format(8.329 GB) RAW_format(7.746 GB) Search_Results(963.062 MB) ProteinProphet_file(3.338 MB) README	HUPO plasma sample	HUPO LAb 34 is Speicher, Wistar Institute, Philadelphia, PA, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000070	HUPO PPP-I Lab 37 hep	Human	mzXML_format(81.385 MB) RAW_format(72.688 MB) Search_Results(2.980 MB) ProteinProphet_file(41.803 KB) README	HUPO plasma sample	HUPO Lab 37 is Tsugita/Hosokawa, Proteomics Research Lab, Tsukuba, Japan	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000101	HUPO PPP-I Lab 40 b1-hep	Human	mzXML_format(973.868 MB) RAW_format(875.006 MB) Search_Results(70.936 MB) ProteinProphet_file(514.624 KB) README	HUPO plasma sample	HUPO Lab 40 is Wang R, Mass Spec Proteomics Lab, Mount Sinai, New York, NY, USA	Omenn et al, Proteomics 2005; 5: 3226-3245
PAe000845	HUPO PPP-I Lab 46 c1-serum	Human	mzXML_format(169.545 MB) RAW_format(150.295 MB) Search_Results(35.967 MB) ProteinProphet_file(101.093 KB) README	hupo46_c1-serum_cam	HUPO Lab 46
PAe000876	HUPO PPP-I Lab 46 reference	Human	mzXML_format(1.226 GB) RAW_format(1.137 GB) Search_Results(238.752 MB) ProteinProphet_file(804.097 KB) README	hupo46_reference_cam	HUPO Lab 46
PAe000794	HUPO PPP-I Lab 53 reference	Human	mzXML_format(720.070 MB) RAW_format(643.086 MB) Search_Results(290.687 MB) ProteinProphet_file(1.244 MB) README	hupo53_reference_cam	HUPO Lab 53
PAe000846	HUPO PPP-I Lab 55 b1-cit	Human	mzXML_format(1.038 GB) RAW_format(964.528 MB) Search_Results(480.228 MB) ProteinProphet_file(1.214 MB) README	hupo55_b1-cit_cam	HUPO Lab 55
PAe001291	Mallick PPP-2	Human	mzXML_format(556) Search_Results(294.006 MB) ProteinProphet_file(334.539 KB) README	Human plasma data submitted to ProteomExchange as part of the Plasma Proteome Project phase II.	Parag Mallick
PAe000172	NCI Large Human Serum Survey	Human	mzXML_format(6.628 GB) RAW_format(6.015 GB) Search_Results(4.572 GB) sequest_params0 ProteinProphet_file(5.671 MB) README	NCI Large Human Serum Survey	King C. Chan, David A. Lucas, Denise M. Hise, Carl F. Schaefer, Zhen Xiao, George M. Janini, Kenneth H. Buetow, Haleem J. Issaq, Timothy D. Veenstra and Thomas P. Conrads (NCI)
PAe001285	Normal_LCQ_Cys_May04	Human	mzXML_format(200.375 MB) Search_Results(65.709 MB) ProteinProphet_file(189.253 KB) README	One normal patient. MARS-6 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only. Unpublished data. Instrument is LCQ but particular model is unsure.	Richard Smith
PAe001279	Normal_LCQ_Glyco_Jun04	Human	mzXML_format(187.161 MB) Search_Results(71.106 MB) ProteinProphet_file(152.257 KB) README	One healthy subject. MARS-6 depletion, carboxy amido methylation of Cys, oxidation of Met. Glycopeptides only.	Richard Smith	Liu et al. (2005)
PAe001284	Normal_LCQ_NoCys_May04	Human	mzXML_format(246.127 MB) Search_Results(83.867 MB) ProteinProphet_file(654.129 KB) README	One normal patient. MARS-6 depletion, oxidation of Met. Cys-containing peptides EXCLUDED. Unpublished data. Instrument is LCQ but specific model is unsure.	Richard Smith
PAe001283	Normal_LCQ_NoCys_Oct04	Human	mzXML_format(224.787 MB) Search_Results(81.865 MB) ProteinProphet_file(751.078 KB) README	One normal patient. MARS-6 depletion, oxidation of Met. Cys-containing peptides EXCLUDED. Unpublished data. Instrument is LCQ but specific model is unsure.	Richard Smith
PAe001289	Normal_LTQ_Cys_Dec04	Human	mzXML_format(1.829 GB) Search_Results(370.611 MB) ProteinProphet_file(1.269 MB) README	One normal patient. MARS-6 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only. Unpublished data.	Richard Smith
PAe001282	Normal_LTQ_Glyco_Nov04	Human	mzXML_format(1.392 GB) Search_Results(601.357 MB) ProteinProphet_file(499.038 KB) README	One healthy subject. MARS-6 depletion, carboxy amido methylation of Cys, oxidation of Met. Glycopeptides only. Instrument: LCQ (unsure of particular model)	Richard Smith	Liu et al. (2005)
PAe000171	Novartis MicroProt	Human	mzXML_format(54.559 GB) Search_Results(3.591 GB) ProteinProphet_file(2.808 MB) README	From 2.5 liters of plasma pooled from dozens of normal patients the sample was extensively fractionated into 37,000 fractions and analyzed with a fleet of 38 Bruker ion trap mass spectrometers by GeneProt.	We thank Novartis for releasing the data from the Novartis-GeneProt collaboration. Contact: Manuel Peitsch
PAe000265	Novartis MicroProt2	Human	mzXML_format(35.743 GB) Search_Results(2.140 GB) ProteinProphet_file(1.635 MB) README	From 2.5 liters of plasma pooled from dozens of normal female patients the sample was extensively fractionated into 7,000 fractions and analyzed with a fleet of 38 Bruker ion trap mass spectrometers by GeneProt.	We thank Novartis for releasing the data from the Novartis-GeneProt collaboration. Contact: Manuel Peitsch
PAe000074	PID_serum	Human	mzXML_format(476.540 MB) Search_Results(420.030 MB) sequest_params0 ProteinProphet_file(467.866 KB) README	serum sample	Biaoyang Lin
PAe000267	Plasma after multiple freeze/thaw cycles	Human	mzXML_format(4.947 GB) Search_Results(155.639 MB) ProteinProphet_file(258.598 KB) README	Plasma after multiple freeze/thaw cycles	Parag Mallick
PAe000263	PMallick Plasma sample BOB2H_ISB on LTQ FT	Human	mzXML_format(5.753 GB) Search_Results(146.132 MB) ProteinProphet_file(219.024 KB) README	PMallick Plasma sample BOB2H_ISB on LTQ FT	Parag Mallick
PAe000266	PMallick Plasma sample BOB2L on LTQ FT	Human	mzXML_format(8.759 GB) Search_Results(286.994 MB) ProteinProphet_file(428.363 KB) README	PMallick Plasma sample BOB2L on LTQ FT	Parag Mallick
PAe000261	PMallick Plasma sample BOB2L_ISB on LTQ FT	Human	mzXML_format(4.369 GB) Search_Results(113.310 MB) ProteinProphet_file(239.244 KB) README	PMallick Plasma sample BOB2L_ISB on LTQ FT	Parag Mallick
PAe000264	PMallick Plasma sample with spiked in proteins on LTQ FT	Human	mzXML_format(16.947 GB) Search_Results(482.777 MB) ProteinProphet_file(617.525 KB) README	PMallick Plasma sample with spiked in proteins on LTQ FT	Parag Mallick
PAe000276	Qian Plasma alkylated samples	Human	mzXML_format(1.311 GB) raw_format(1.179 GB) Search_Results(431.052 MB) ProteinProphet_file(2.032 MB) README	Qian Plasma alkylated samples	Weijun Qian
PAe000278	Qian Plasma non alkylated samples	Human	mzXML_format(5.929 GB) RAW_format(1.145 GB) Search_Results(1.784 GB) ProteinProphet_file(3.120 MB) README	Qian Plasma non alkylated samples	Weijun Qian
PAe000282	Serum free-flow (FFE) on LTQ	Human	mzXML_format(3.467 GB) RAW_format(3.216 GB) Search_Results(756.492 MB) ProteinProphet_file(788.500 KB) README	Serum free-flow (FFE) on LTQ	Johan Malmstrom
PAe000280	Serum free-flow (FFE) on LTQ-FT	Human	mzXML_format(118.650 MB) Search_Results(16.752 MB) ProteinProphet_file(86.641 KB) README	Serum free-flow (FFE) on LTQ-FT	Johan Malmstrom
PAe000279	Serum off-gel electrophoresis (OGE) on LTQ	Human	mzXML_format(1.950 GB) RAW_format(1.794 GB) Search_Results(232.863 MB) ProteinProphet_file(788.483 KB) README	Serum off-gel electrophoresis (OGE) on LTQ	Johan Malmstrom
PAe000281	Serum off-gel electrophoresis (OGE) on LTQ-FT	Human	mzXML_format(826.819 MB) RAW_format(12.922 GB) Search_Results(126.314 MB) ProteinProphet_file(1.535 MB) README	Serum off-gel electrophoresis (OGE) on LTQ-FT	Johan Malmstrom
PAe001286	Trauma_LTQ_Cys_Apr05	Human	mzXML_format(2.379 GB) Search_Results(249.537 MB) ProteinProphet_file(1.352 MB) README	Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only.	Richard Smith	Liu et al. (2006)
PAe001288	Trauma_LTQ_Cys_Mar05	Human	mzXML_format(2.499 GB) Search_Results(283.241 MB) ProteinProphet_file(1.525 MB) README	Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Cys-containing peptides only.	Richard Smith	Liu et al. (2006)
PAe001280	Trauma_LTQ_Glyco_Apr05	Human	mzXML_format(2.180 GB) Search_Results(442.018 MB) ProteinProphet_file(1.166 MB) README	Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Glycopeptides only.	Richard Smith	Liu et al. (2006)
PAe001281	Trauma_LTQ_Glyco_Mar05	Human	mzXML_format(2.285 GB) Search_Results(564.735 MB) ProteinProphet_file(1.310 MB) README	Pool of 6 severe trauma patients. IgY-12 depletion, carboxy amido methylation of Cys, oxidation of Met. Glycopeptides only.	Richard Smith	Liu et al. (2006)
PAe001290	Trauma_LTQ_NoCys_Mar05	Human	mzXML_format(2.212 GB) Search_Results(366.196 MB) ProteinProphet_file(2.196 MB) README	Pool of 6 severe trauma patients. IgY-12 depletion, oxidation of Met. Cys-containing peptides EXCLUDED.	Richard Smith	Liu et al. (2006)
PAe001287	Trauma_LTQ_NonGlyco_Apr05	Human	mzXML_format(2.317 GB) Search_Results(312.185 MB) ProteinProphet_file(2.010 MB) README	Poo of 6 severe trauma patience. IgY-12 depletion, no Cys reducton, oxidation of Met. Glycopeptides EXCLUDED.	Richard Smith	Liu et al. (2006)