PeptideAtlas API

Endpoint

https://peptideatlas.org/api/promast/v1/map

Parameters

peptide

peptide sequence to search

proteome

name of the reference proteome to search View List ▲

At	Arabidopsis thaliana
BORBU	Borrelia burgdorferi
CANAL	Candida albicans
Cf	Canis familiaris (Dog)
Ce	C.elegans
Gg	Chicken
Bt	Cow Milk
Dm	Drosophila
ECOLI	E coli
FC	Felis catus (Cat)
Halo	Halobacterium
Apis	HoneyBee
MYG	Horse
Hs	Human
LABRO	Labeo rohita
Li	Leptospira interrogans
Maize	Maize
Mm	Mouse
MTB	Mycobacterium tuberculosis
Pig	Pig
Pf	Plasmodium falciparum
Py	Plasmodium yoelii
PSEAE	Pseudomonas aeruginosa
Rn	Rat
Rice	Rice
SARS-CoV-2	SARS-CoV-2
SPOM	Schizosaccharomyces pombe
STAAC	Staphylococcus aureus COL
STRP2	Streptococcus pneumoniae D39
STRPN	Streptococcus pneumoniaeTIGR
Sp	Streptococcus pyogenes
Sc	Yeast
Dr	Zebrafish

fuzzy

number of wildcards to consider (1-3)

tolerance

mass tolerance for matching wildcards

output

results format: tsv or json

Examples

curl -X GET 'https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=ALFLETEQLK'

curl -X GET --header 'Accept: application/json' 'https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=ALFLETEQLK'

curl -X GET 'https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=LETEQLK&fuzzy=1'

curl -X GET 'https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=FLETEQLK&fuzzy=3&tolerance=0.0001'

curl -X GET --header 'Accept: application/json' 'https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=FLETEQLK&fuzzy=3&tolerance=0.0001'

https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=ALFLETEQLK&output=tsv

https://peptideatlas.org/api/promast/v1/map?proteome=Hs&peptide=ALFLETEQLK&output=json

Documentation for ProMaST map function

Endpoint

Parameters

Examples