34	datasets
113	experiments
834	MS runs
11,925,423	PSMs
433,679	distinct peptides
4,955	canonical proteins

About

The Candida albicans PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Candida albicans were reprocessed from MS raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected Candida albicans proteins

Chromosome Summary

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Column descriptions ▲

Entries: Number of entries in each chromosome
Canonical: Proteins seen with 2 distinct, uniquely mapping peptides
Uncertain: Proteins with some evidence that is not sufficient for canonical status
Redundant: Proteins that have peptides that map to them, but not uniquely and thus not needed to explain the observed peptides
Not Observed: No detections at all in PeptideAtlas above our very stringent threshold

Publications

Candida albicans a comprehensive view of the proteome; Gómez Artíguez, Leticia; de la Camara Fuentes, Samuel; Sun, Zhi; Hernáez, Maria; Borrajo, Ana; Pitarch, Aida; Molero, Gloria; Monteoliva, Lucia; Moritz, Robert; Deutsch, Eric; Gil, Concha
J Proteome Res. 2025 (accepted)

Download

Below are individual Candida albicans PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Candida albicans 2024-03 PSM FDR = 0.001Latest Build

Biosequence Set in FASTA format [10MB]
Database tables exported as TSV dump file [66MB]
Database tables exported as mysql dump file [53MB]
Peptide CDS and chromosomal coordinates [25MB]
Peptide CDS coordinates [16MB]
Peptide sequences in FASTA format [5MB]

Candida albicans 2014-05 PSM FDR = 0.01

Biosequence Set in FASTA format [7MB]
Database tables exported as an XML file [38MB]
Database tables exported as mysql dump file [22MB]
Peptide CDS and chromosomal coordinates [6MB]
Peptide CDS coordinates [2MB]
Peptide sequences in FASTA format [1MB]

Help

Complete description of each of the available download formats

Other Resources

Candida albicans SC5314 Genome Snapshot/Overview at the Candida Genome Database
Candida albicans at Wikipedia