1	dataset
2	experiments
62	MS runs
47,912	PSMs
6,994	distinct peptides
2,536	canonical proteins

About

The C.elegans Phospho PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of C.elegans Phospho samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Download

Below are individual C.elegans Phospho PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

C.elegans Phospho 2010-06 PSM FDR = 0.015Latest Build

Biosequence Set in FASTA format [27MB]
Database tables exported as an XML file [4MB]
Database tables exported as mysql dump file [2MB]
Peptide CDS and chromosomal coordinates [1MB]
Peptide CDS coordinates [943KB]
Peptide sequences in FASTA format [210KB]

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Complete description of each of the available download formats