1	dataset
29	experiments
800	MS runs
5,078,871	PSMs
109,710	distinct peptides
6,646	canonical proteins

About

The Chicken PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Chicken datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Publication

The PeptideAtlas of the Domestic Laying Hen
James McCord, Zhi Sun, Eric W. Deutsch, Robert L. Moritz, and David C. Muddiman
Journal of Proteome Research 2017 16 (3), 1352-1363
DOI : 10.1021/acs.jproteome.6b00952

Download

Below are individual Chicken PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Chicken 2016-07 PSM FDR = 0.00008Latest Build

Biosequence Set in FASTA format [38MB]
Database tables exported as mysql dump file [4GB]
Peptide CDS and chromosomal coordinates [29MB]
Peptide CDS coordinates [14MB]
Peptide sequences in FASTA format [3MB]

Help

Complete description of each of the available download formats