1	dataset
1	experiments
384	MS runs
1,193,509	PSMs
49,220	distinct peptides
3,896	canonical proteins

About

The Schizosaccharomyces pombe (Fission Yeast) PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Schizosaccharomyces pombe samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas
Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R. Mol Cell Proteomics. 2013 Jun;12(6):1741-51
DOI : 10.1074/mcp.M112.023754. Epub 2013 Mar 5. PMID: 23462206; PMCID: PMC3675828.

Download

Below are individual Schizosaccharomyces pombe PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Fission Yeast 2012-08 PSM FDR = 0.00005Latest Build

Biosequence Set in FASTA format [5MB]
Peptide CDS and chromosomal coordinates [3MB]
Peptide CDS coordinates [2MB]
Peptide sequences in FASTA format [1MB]

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Complete description of each of the available download formats