3	datasets
102	experiments
832	MS runs
1,523,838	PSMs
37,940	distinct peptides
2,043	canonical proteins

About

The Halobacterium PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Halobacterium samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Below are individual Halobacterium PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Halobacterium 2014-11 PSM FDR = 0.00008Latest Build

Biosequence Set in FASTA format [3MB]
Peptide CDS and chromosomal coordinates [2MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [1MB]

Halobacterium 2013-08 PSM FDR = 0.001

Biosequence Set in FASTA format [3MB]
Database tables exported as an XML file [14MB]
Database tables exported as mysql dump file [4MB]
Peptide CDS and chromosomal coordinates [1MB]
Peptide CDS coordinates [690KB]
Peptide sequences in FASTA format [477KB]

Halobacterium 2012-02 PSM FDR = 0.00004

Biosequence Set in FASTA format [3MB]
Peptide CDS and chromosomal coordinates [1MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [794KB]

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Complete description of each of the available download formats

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