51	experiments
516,198	PSMs
23,937	distinct peptides
2,622	canonical proteins

About

The Horse PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Horse samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research
Bundgaard L, Jacobsen S, Sørensen MA, Sun Z, Deutsch EW, Moritz RL, Bendixen E
Proteomics. 2014 Mar;14(6):763-73
DOI : 10.1002/pmic.201300398. Epub 2014 Feb 16. PMID: 24436130; PMCID: PMC4340707.

Download

Below are individual Horse PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Horse 2013-04 PSM FDR = 0.0008Latest Build

Biosequence Set in FASTA format [54MB]
Database tables exported as an XML file [12MB]
Database tables exported as mysql dump file [7MB]
Peptide CDS and chromosomal coordinates [6MB]
Peptide CDS coordinates [3MB]
Peptide sequences in FASTA format [624KB]

Help

Complete description of each of the available download formats