About

The Human HLA PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

This PeptideAtlas build was created from the subset of all human proteomics datasets that are derived from samples enriched in MHC class I- and class II-bound peptides.

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Publications

A manuscript describing this build is in progress. For now, if you use these results, please cite:

• Latest publication: Omenn GS, Lane L, Overall CM, Pineau C, Packer NH, Cristea IM, Lindskog C, Weintraub ST, Orchard S, Roehrl MHA, Nice E, Liu S, Bandeira N, Chen YJ, Guo T, Aebersold R, Moritz RL, Deutsch EW. The 2022 Report on the Human Proteome from the HUPO Human Proteome Project; J Proteome Res. 2022 Nov 1. doi: 10.1021/acs.jproteome.2c00498. PMID: 36318223,
• Initial publication: Desiere et al., "Integration of Peptide Sequences Obtained by High-Throughput Mass Spectrometry with the Human Genome", Genome Biology 2004, 6:R9 - [PDF]

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Below are individual Human HLA PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

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Complete description of each of the available download formats

Other Resources

• neXtProt