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Full 2023-06 Build Summary
295datasets
1,170experiments
85,425MS runs
3,529,911,608spectra searched
573,579,510PSMs
2,847,132distinct peptides
16,888canonical proteins

About

The Human non-HLA PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

This PeptideAtlas build was created from the subset of all human proteomics datasets that are not derived from samples enriched in MHC class I- and class II-bound peptides.

Explore

SEARCH(e.g. P00747)

Publications

A manuscript describing this build is in progress. For now, if you use these results, please cite:

Download

Below are individual Human non-HLA PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Human non-HLA 2023-06 PSM FDR = 0.0001Latest Build
  • Biosequence Set in FASTA format [665MB]
  • Database tables exported as TSV dump file [437MB]
  • Database tables exported as mysql dump file [400MB]
  • Peptide CDS and chromosomal coordinates [5GB]
  • Peptide CDS coordinates [3GB]
  • Peptide sequences in FASTA format [85MB]

Help

Complete description of each of the available download formats

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