The Human non-HLA PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.
This PeptideAtlas build was created from the subset of all human proteomics datasets that are not derived from samples enriched in MHC class I- and class II-bound peptides.
A manuscript describing this build is in progress. For now, if you use these results, please cite:
Below are individual Human non-HLA PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.
Complete description of each of the available download formats