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Full 2021-06 Build Summary
94,831distinct peptides
2,750canonical proteins


The Human Plasma / Extracellular Vesicles PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Human Plasma / Extracellular Vesicles datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.


SEARCH(e.g. Q9Y4H2)


If you use the Human Plasma / Extracellular Vesicles PeptideAtlas builds for your work, please cite:

  • Deutsch EW, Omenn GS, Sun Z, Maes M, Pernemalm M, Palaniappan KK, Letunica N, Vandenbrouck Y, Brun V, Tao SC, Yu X, Geyer PE, Ignjatovic V, Moritz RL, Schwenk JM, Advances and Utility of the Human Plasma Proteome, J Proteome Res. 2021 Dec 3;20(12):5241-5263
  • Download

    Below are individual Human Plasma / Extracellular Vesicles PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

    Human Plasma EV 2021-06 PSM FDR = 0.001Latest Build
    • Biosequence Set in FASTA format [511MB]
    • Database tables exported as mysql dump file [65MB]
    • Peptide CDS and chromosomal coordinates [181MB]
    • Peptide CDS coordinates [105MB]
    • Peptide sequences in FASTA format [2MB]


    Complete description of each of the available download formats

    Other Resources