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Full 2022-02 Build Summary
49experiments
6,322,790PSMs
130,687distinct peptides
3,880canonical proteins

About

The Human Urine PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Human Urine datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Download

Below are individual Human Urine PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Human Urine 2022-02 PSM FDR = 0.001Latest Build
  • Biosequence Set in FASTA format [598MB]
  • Database tables exported as TSV dump file [123MB]
  • Database tables exported as mysql dump file [101MB]
  • Peptide CDS and chromosomal coordinates [241MB]
  • Peptide CDS coordinates [138MB]
  • Peptide sequences in FASTA format [3MB]
Human Urine 2013-08 PSM FDR = P >= 0.9
  • Biosequence Set in FASTA format [278MB]
  • Database tables exported as an XML file [17MB]
  • Database tables exported as mysql dump file [10MB]
  • Peptide CDS and chromosomal coordinates [22MB]
  • Peptide CDS coordinates [11MB]
  • Peptide sequences in FASTA format [679KB]
Human Urine 2012-09 PSM FDR = 0.003
  • Biosequence Set in FASTA format [229MB]
  • Database tables exported as an XML file [253MB]
  • Database tables exported as mysql dump file [152MB]
  • Peptide CDS and chromosomal coordinates [5MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [195KB]
Human Urine 2010-06 PSM FDR = 0.003
  • Biosequence Set in FASTA format [157MB]
  • Database tables exported as an XML file [97MB]
  • Database tables exported as mysql dump file [59MB]
  • Peptide CDS and chromosomal coordinates [5MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [195KB]

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Complete description of each of the available download formats

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