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Full 2023-04 Build Summary
22datasets
24experiments
851MS runs
24,033,234spectra searched
4,530,219PSMs
2,679canonical proteins

About

The Mouse Plasma PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of mus musculus blood plasma samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Download

Below are individual Mouse Plasma PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Mouse Plasma 2023-04 PSM FDR = 0.0005Latest Build
  • Biosequence Set in FASTA format [201MB]
  • Database tables exported as TSV dump file [41MB]
  • Database tables exported as mysql dump file [41MB]
  • Peptide CDS and chromosomal coordinates [57MB]
  • Peptide CDS coordinates [30MB]
  • Peptide sequences in FASTA format [2MB]
Mouse Plasma 2012-09 PSM FDR = 0.00006
  • Biosequence Set in FASTA format [152MB]
  • Database tables exported as an XML file [4MB]
  • Database tables exported as mysql dump file [2MB]
  • Peptide CDS and chromosomal coordinates [4MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [231KB]
Mouse Plasma 2011-09 PSM FDR = 0.00006
  • Biosequence Set in FASTA format [109MB]
  • Database tables exported as an XML file [4MB]
  • Database tables exported as mysql dump file [2MB]
  • Peptide CDS and chromosomal coordinates [4MB]
  • Peptide CDS coordinates [2MB]
  • Peptide sequences in FASTA format [231KB]
Mouse Plasma 2010-06 PSM FDR = 0.0001
  • Biosequence Set in FASTA format [105MB]
  • Database tables exported as an XML file [180MB]
  • Database tables exported as mysql dump file [112MB]
  • Peptide CDS and chromosomal coordinates [3MB]
  • Peptide CDS coordinates [1MB]
  • Peptide sequences in FASTA format [205KB]
Mouse Plasma 2007-05 Protein Prob >= 0.9
  • Biosequence Set in FASTA format [399KB]
  • Database tables exported as an XML file [14MB]
  • Database tables exported as mysql dump file [11MB]

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Complete description of each of the available download formats

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