4	datasets
19	experiments
383	MS runs
1,953,857	PSMs
57,747	distinct peptides
4,036	canonical proteins

About

The Pseudomonas aeruginosa PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Pseudomonas aeruginosa datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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Publication

A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen
J.A. Reales-Calderón, Z. Sun, V. Mascaraque, E. Pérez-Navarro, V. Vialás, E.W. Deutsch, R.L. Moritz, C. Gil, J.L. Martínez, G. Molero
Journal of Proteomics, Volume 239, 2021, 104192
DOI : 10.1016/j.jprot.2021.104192

Download

Below are individual Pseudomonas aeruginosa PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Pseudomonas aeruginosa 2021-01 PSM FDR = 0.0002Latest Build

Biosequence Set in FASTA format [4MB]
Peptide CDS and chromosomal coordinates [4MB]
Peptide CDS coordinates [2MB]
Peptide sequences in FASTA format [1MB]

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Complete description of each of the available download formats