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Full 2021-01 Build Summary
57,747distinct peptides
4,036canonical proteins


The Pseudomonas aeruginosa PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available Pseudomonas aeruginosa datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.


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  • Reales-Calderon et al., A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen, Journal of Proteomics (2021)
  • Download

    Below are individual Pseudomonas aeruginosa PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

    Pseudomonas aeruginosa 2021-01 PSM FDR = 0.0002Latest Build
    • Biosequence Set in FASTA format [4MB]
    • Peptide CDS and chromosomal coordinates [4MB]
    • Peptide CDS coordinates [2MB]
    • Peptide sequences in FASTA format [1MB]


    Complete description of each of the available download formats