2	experiments
186,048	PSMs
14,460	distinct peptides
1,856	canonical proteins

About

The Plasmodium falciparum PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Plasmodium falciparum samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

Total and putative surface proteomics of malaria parasite salivary gland sporozoites
Lindner SE, Swearingen KE, Harupa A, Vaughan AM, Sinnis P, Moritz RL, Kappe SH
Mol Cell Proteomics. 2013 May;12(5):1127-43
DOI : 10.1074/mcp.M112.024505. Epub 2013 Jan 16. PMID: 23325771; PMCID: PMC3650326.

Download

Below are individual Plasmodium falciparum PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Plasmodium falciparum 2012-09 PSM FDR = 0.00005Latest Build

Biosequence Set in FASTA format [5MB]
Database tables exported as an XML file [4MB]
Database tables exported as mysql dump file [2MB]
Peptide CDS and chromosomal coordinates [1MB]
Peptide CDS coordinates [657KB]
Peptide sequences in FASTA format [371KB]

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Complete description of each of the available download formats