11	datasets
42	experiments
838	MS runs
14,588,338	spectra searched
682,979	PSMs
35,147	distinct phosphopeptides
1,907	canonical proteins

About

The Plasmodium Phosphoproteome PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of phosphopeptide enrichment plasmodium falciparum samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected Plasmodium canonical proteins

Publications

Phosphorylation in the Plasmodium falciparum Proteome: A Meta-Analysis of Publicly Available Data Sets
Oscar J. M. Camacho, Kerry A. Ramsbottom, Ananth Prakash, Zhi Sun, Yasset Perez Riverol, Emily Bowler-Barnett, Maria Martin, Jun Fan, Eric W. Deutsch, Juan Antonio Vizcaíno, and Andrew R. Jones
doi: 10.1021/acs.jproteome.4c00418

Download

Below are individual Plasmodium Phospho PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Plasmodium Phospho 2023-10 PSM FDR = 0.0005Latest Build

Biosequence Set in FASTA format [35MB]
Database tables exported as TSV dump file [12MB]
Database tables exported as mysql dump file [10MB]
Peptide CDS and chromosomal coordinates [2MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [1MB]
Spectral library (HR-HCD) [72MB]
Spectral library (LR-IT-CID) [5MB]
Spectral library (LR-IT-ETD) [2MB]
Spectral library (TMT_HR-HCD) [290MB]
Spectral library (TMT_HR-IT-CID) [127MB]
Spectral library (iTRAQ_HR-HCD) [116MB]

Phosphosites

PTMeXchange final Gold, Silver, Bronze phosphosites [6.4MB]

Help

Complete description of each of the available download formats

Other Resources

Acknowledgements

We gratefully acknowledge the support for the Plasmodium Phospho PeptideAtlas from the National Science Foundation grant DBI-1933311 “PTMexchange: Globally harmonized re-analysis and sharing of data on post-translational modifications” .