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Full 2023-10 Build Summary
838MS runs
14,588,338spectra searched
35,147distinct phosphopeptides
1,907canonical proteins


The Plasmodium Phosphoproteome PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of phosphopeptide enrichment plasmodium falciparum samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.


SEARCH(e.g. PF3D7_0102200.1-p1)


A publication describing the Plasmodium Phospho PeptideAtlas build is in progress. For now, please just reference this URL, and check back later for a citation.


Below are individual Plasmodium Phospho PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Plasmodium Phospho 2023-10 PSM FDR = 0.0005Latest Build
  • Biosequence Set in FASTA format [35MB]
  • Database tables exported as TSV dump file [12MB]
  • Database tables exported as mysql dump file [10MB]
  • Peptide CDS and chromosomal coordinates [2MB]
  • Peptide CDS coordinates [1MB]
  • Peptide sequences in FASTA format [1MB]


Complete description of each of the available download formats

Other Resources


We gratefully acknowledge the support for the Plasmodium Phospho PeptideAtlas from the National Science Foundation grant DBI-1933311 “PTMexchange: Globally harmonized re-analysis and sharing of data on post-translational modifications” .