1	dataset
10	experiments
146	MS runs
1,676,343	PSMs
32,664	distinct peptides
1,356	canonical proteins

About

The Streptococcus pneumoniae D39 PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Streptococcus pneumoniae D39 samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

In vivo proteomics identifies the competence regulon and AliB oligopeptide transporter as pathogenic factors in pneumococcal meningitis
Schmidt F, Kakar N, Meyer TC, Depke M, Masouris I, Burchhardt G, Gómez-Mejia A, Dhople V, Håvarstein LS, Sun Z, Moritz RL, Völker U, Koedel U, Hammerschmidt S.
PLoS Pathog. 2019 Jul 29;15(7):e1007987
DOI : 10.1371/journal.ppat.1007987 PMID: 31356624; PMCID: PMC6687184.

Download

Below are individual Streptococcus pneumoniae D39 PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

S. pneumoniae D39 2019-06 PSM FDR = 0.0001Latest Build

Biosequence Set in FASTA format [1MB]
Peptide CDS and chromosomal coordinates [2MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [965KB]

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Complete description of each of the available download formats