20	experiments
2,903,742	PSMs
287,548	distinct peptides
8,956	canonical proteins

About

The Rat PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Rat samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

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Below are individual Rat PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

Rat 2013-11 PSM FDR = P > 0.0025Latest Build

Biosequence Set in FASTA format [121MB]
Database tables exported as an XML file [124MB]
Database tables exported as mysql dump file [68MB]
Peptide CDS and chromosomal coordinates [131MB]
Peptide CDS coordinates [66MB]
Peptide sequences in FASTA format [7MB]

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Complete description of each of the available download formats