9	experiments
2,136,409	PSMs
217,420	distinct peptides
5,981	canonical proteins

About

The SARS-CoV-2 PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available SARS-CoV-2 datasets were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

Explore

SEARCH(e.g. SARS2_SPIKE)

BROWSE

All detected SARS-CoV-2 proteins.

PROTEOME MAP

Publications

A publication describing the SARS-CoV-2 PeptideAtlas build is in progress. For now, please just reference this URL, and check back later for a citation.

Download

Below are individual SARS-CoV-2 PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build, nor are all file formats available for every build. Link names encode the PeptideProphet cutoff used when creating that build, for example a link named "PSM FDR=0.002" denotes a PSM FDR threshold 0.002 (0.2%) is applied to every sample in the build.

SARS-CoV-2 2020-06 PSM FDR = 0.002

Biosequence Set in FASTA format [76MB]
Peptide CDS and chromosomal coordinates [48MB]
Peptide CDS coordinates [32MB]
Peptide sequences in FASTA format [5MB]

SARS-CoV-2 2020-06 Synthetic PSM FDR = 0.001Recombinant Protein build

Biosequence Set in FASTA format [24MB]
Peptide CDS and chromosomal coordinates [2MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [768KB]

Help

Complete description of each of the available download formats

Other Resources

Acknowledgements

We thank Amazon Web Services for computing time.