1	dataset
4	experiments
232	MS runs
233,124	PSMs
24,858	distinct peptides
1,706	canonical proteins

About

The Staphylococcus aureus COL PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Staphylococcus aureus COL samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

A Proteomic View of an Important Human Pathogen – Towards the Quantification of the Entire Staphylococcus aureus Proteome
Dörte Becher,Kristina Hempel,Susanne Sievers,Daniela Zühlke,Jan Pané-Farré,Andreas Otto,Stephan Fuchs,Dirk Albrecht,Jörg Bernhardt,Susanne Engelmann,Uwe Völker,Jan Maarten van Dijl,Michael Hecker
PLoS ONE 4(12): e8176 (2009)
DOI : 10.1371/journal.pone.0008176

Download

Below are individual Staphylococcus aureus COL PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

S. aureus COL 2013-10 P > 0.9Latest Build

Biosequence Set in FASTA format [1MB]
Database tables exported as mysql dump file [1GB]
Peptide CDS and chromosomal coordinates [1MB]
Peptide CDS coordinates [1MB]
Peptide sequences in FASTA format [699KB]

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Complete description of each of the available download formats