1	dataset
17	experiments
372	MS runs
2,434,452	PSMs
84,106	distinct peptides
2,109	canonical proteins

About

The Staphylococcus aureus HG001 PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.

Available datasets of Staphylococcus aureus HG001 samples were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.

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All detected canonical proteins

Publications

A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions
Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C. Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W. Deutsch, Samuel L. Bader, Michael Hecker, Robert L. Moritz, Ulrike Mäder, Uwe Völker & Frank Schmidt
Sci Rep 7, 9718 (2017)
DOI : 10.1038/s41598-017-10059-w

Download

Below are individual Staphylococcus aureus HG001 PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.

S. aureus HG001 2015-12 PSM FDR = 0.003Latest Build

Biosequence Set in FASTA format [2MB]
Peptide CDS and chromosomal coordinates [6MB]
Peptide CDS coordinates [4MB]
Peptide sequences in FASTA format [2MB]

S. aureus HG001 2014-09 PSM FDR = 0.005

Biosequence Set in FASTA format [2MB]
Database tables exported as mysql dump file [1GB]
Peptide CDS and chromosomal coordinates [5MB]
Peptide CDS coordinates [3MB]
Peptide sequences in FASTA format [2MB]

S. aureus NCTC8325 2013-10 PSM FDR = 0.003

Biosequence Set in FASTA format [2MB]
Peptide CDS and chromosomal coordinates [4MB]
Peptide CDS coordinates [3MB]
Peptide sequences in FASTA format [1MB]

Help

Complete description of each of the available download formats