The Yeast PeptideAtlas provides a compendium of results from uniformly reprocessed mass spectrometry proteomics datasets.
Available datasets of Saccharomyces cerevisiae were reprocessed from the raw files using the Trans-Proteomic Pipeline suite of tools.
There is no publication for this build, but we would welcome a citation to the original yeast build and the original PeptideAtlas paper.
Below are individual Yeast PeptideAtlas builds available for download in various flat file formats. Note that not all files contain all information from the build. A build subtitled "PSM FDR=0.002" denotes a PSM FDR threshold of 0.002 (0.2%) is applied to every sample in the build.
Complete description of each of the available download formats